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3d convex hull  (Amira Pharmaceuticals)

 
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    Amira Pharmaceuticals 3d convex hull
    3d Convex Hull, supplied by Amira Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3d+convex+hull/3d+convex+hull/pm24132251-159-24-9
    Average 90 stars, based on 1 article reviews
    3d convex hull - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Three dimensional quantitative characterization of magnetite nanoparticles embedded in mesoporous silicon: local curvature, demagnetizing factors and magnetic Monte Carlo simulations.
    Article Snippet: The surface area of the particles was calculated in Amira as the sum of the triangle areas and the volume was calculated using the 3D convex hull of the point set.



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    Fig. 4. Morphological analysis of hippocampal microglia. To evaluate microglial activation, images of IBA-1-positive microglia in three different subregions of the dorsal hippocampus (CA1, CA3 and DG) were acquired, and microglial morphology analyzed. (A) Representative images showing IBA-1-positive microglia in the CA1 subregion in green <t>(left).</t> <t>IMARIS</t> <t>3D</t> arborization (center) and IMARIS convexHull (right) visualizations of H-CSR CTR and PPS rats (scale bar: 30 µm). (B) Radar chart containing the average results of the most relevant morphological features analyzed. (C) Quantitative analysis of hippocampal microglial morphology. Results represent the average values of the 3 subregions. Each dot represents an animal (N: N-CSR = 18 (9 CTR and 9 PPS); H-CSR = 24 (12 CTR and 12 PPS)). On average, more than 20 cells per rat were analyzed for soma volume, arborization volume, convexHull volume, max. branch length and total number of branches. Results are expressed as the mean ± SEM. Two-way ANOVA followed by Sidak’s multiple comparisons test, *p < 0.05. (D-E) Pearson correlation analyses were performed by comparing significantly altered morphological features (arborization volume and total number of branches) and IBA-1 expression (D) and arborization volume and % of time spent floating (FST) (E). Correlations were performed considering all animals (N = 42). The coefficient r and p-value for each correlation are presented in a box. Statistically significant correlations are highlighted in green (p < 0.05). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
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    3d convex hull  (MathWorks Inc)
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    Fig. 4. Morphological analysis of hippocampal microglia. To evaluate microglial activation, images of IBA-1-positive microglia in three different subregions of the dorsal hippocampus (CA1, CA3 and DG) were acquired, and microglial morphology analyzed. (A) Representative images showing IBA-1-positive microglia in the CA1 subregion in green <t>(left).</t> <t>IMARIS</t> <t>3D</t> arborization (center) and IMARIS convexHull (right) visualizations of H-CSR CTR and PPS rats (scale bar: 30 µm). (B) Radar chart containing the average results of the most relevant morphological features analyzed. (C) Quantitative analysis of hippocampal microglial morphology. Results represent the average values of the 3 subregions. Each dot represents an animal (N: N-CSR = 18 (9 CTR and 9 PPS); H-CSR = 24 (12 CTR and 12 PPS)). On average, more than 20 cells per rat were analyzed for soma volume, arborization volume, convexHull volume, max. branch length and total number of branches. Results are expressed as the mean ± SEM. Two-way ANOVA followed by Sidak’s multiple comparisons test, *p < 0.05. (D-E) Pearson correlation analyses were performed by comparing significantly altered morphological features (arborization volume and total number of branches) and IBA-1 expression (D) and arborization volume and % of time spent floating (FST) (E). Correlations were performed considering all animals (N = 42). The coefficient r and p-value for each correlation are presented in a box. Statistically significant correlations are highlighted in green (p < 0.05). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
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    3d convex hull  (Amira Pharmaceuticals)
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    Fig. 4. Morphological analysis of hippocampal microglia. To evaluate microglial activation, images of IBA-1-positive microglia in three different subregions of the dorsal hippocampus (CA1, CA3 and DG) were acquired, and microglial morphology analyzed. (A) Representative images showing IBA-1-positive microglia in the CA1 subregion in green <t>(left).</t> <t>IMARIS</t> <t>3D</t> arborization (center) and IMARIS convexHull (right) visualizations of H-CSR CTR and PPS rats (scale bar: 30 µm). (B) Radar chart containing the average results of the most relevant morphological features analyzed. (C) Quantitative analysis of hippocampal microglial morphology. Results represent the average values of the 3 subregions. Each dot represents an animal (N: N-CSR = 18 (9 CTR and 9 PPS); H-CSR = 24 (12 CTR and 12 PPS)). On average, more than 20 cells per rat were analyzed for soma volume, arborization volume, convexHull volume, max. branch length and total number of branches. Results are expressed as the mean ± SEM. Two-way ANOVA followed by Sidak’s multiple comparisons test, *p < 0.05. (D-E) Pearson correlation analyses were performed by comparing significantly altered morphological features (arborization volume and total number of branches) and IBA-1 expression (D) and arborization volume and % of time spent floating (FST) (E). Correlations were performed considering all animals (N = 42). The coefficient r and p-value for each correlation are presented in a box. Statistically significant correlations are highlighted in green (p < 0.05). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
    3d Convex Hull, supplied by Amira Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3d+convex+hull/3d+convex+hull/pm24132251-159-24-9
    Average 90 stars, based on 1 article reviews
    3d convex hull - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Fig. 4. Morphological analysis of hippocampal microglia. To evaluate microglial activation, images of IBA-1-positive microglia in three different subregions of the dorsal hippocampus (CA1, CA3 and DG) were acquired, and microglial morphology analyzed. (A) Representative images showing IBA-1-positive microglia in the CA1 subregion in green (left). IMARIS 3D arborization (center) and IMARIS convexHull (right) visualizations of H-CSR CTR and PPS rats (scale bar: 30 µm). (B) Radar chart containing the average results of the most relevant morphological features analyzed. (C) Quantitative analysis of hippocampal microglial morphology. Results represent the average values of the 3 subregions. Each dot represents an animal (N: N-CSR = 18 (9 CTR and 9 PPS); H-CSR = 24 (12 CTR and 12 PPS)). On average, more than 20 cells per rat were analyzed for soma volume, arborization volume, convexHull volume, max. branch length and total number of branches. Results are expressed as the mean ± SEM. Two-way ANOVA followed by Sidak’s multiple comparisons test, *p < 0.05. (D-E) Pearson correlation analyses were performed by comparing significantly altered morphological features (arborization volume and total number of branches) and IBA-1 expression (D) and arborization volume and % of time spent floating (FST) (E). Correlations were performed considering all animals (N = 42). The coefficient r and p-value for each correlation are presented in a box. Statistically significant correlations are highlighted in green (p < 0.05). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

    Journal: Brain, behavior, and immunity

    Article Title: Stress-induced depressive-like behavior in male rats is associated with microglial activation and inflammation dysregulation in the hippocampus in adulthood.

    doi: 10.1016/j.bbi.2021.10.018

    Figure Lengend Snippet: Fig. 4. Morphological analysis of hippocampal microglia. To evaluate microglial activation, images of IBA-1-positive microglia in three different subregions of the dorsal hippocampus (CA1, CA3 and DG) were acquired, and microglial morphology analyzed. (A) Representative images showing IBA-1-positive microglia in the CA1 subregion in green (left). IMARIS 3D arborization (center) and IMARIS convexHull (right) visualizations of H-CSR CTR and PPS rats (scale bar: 30 µm). (B) Radar chart containing the average results of the most relevant morphological features analyzed. (C) Quantitative analysis of hippocampal microglial morphology. Results represent the average values of the 3 subregions. Each dot represents an animal (N: N-CSR = 18 (9 CTR and 9 PPS); H-CSR = 24 (12 CTR and 12 PPS)). On average, more than 20 cells per rat were analyzed for soma volume, arborization volume, convexHull volume, max. branch length and total number of branches. Results are expressed as the mean ± SEM. Two-way ANOVA followed by Sidak’s multiple comparisons test, *p < 0.05. (D-E) Pearson correlation analyses were performed by comparing significantly altered morphological features (arborization volume and total number of branches) and IBA-1 expression (D) and arborization volume and % of time spent floating (FST) (E). Correlations were performed considering all animals (N = 42). The coefficient r and p-value for each correlation are presented in a box. Statistically significant correlations are highlighted in green (p < 0.05). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

    Article Snippet: Finally, the masks of the Skeleton and 3D Convex Hull were sent back to the Imaris Scene, and a results file was created with volumes and calculated ratios.

    Techniques: Activation Assay, Expressing